PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09028.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 143aa    MW: 16098.5 Da    PI: 10.3833
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09028.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.19.3e-29148853128
                      NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               + kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s +   vglkk+Lv+y g+a kg+ktdW+mhe+rl
  Rsa1.0_09028.1_g00001.1  14 VGAKEWYFFCMRGRKYKNSVRPNRVTGSGFWKATGIDKPVYS-NLDCVGLKKSLVYYLGSAGKGSKTDWMMHEFRL 88 
                              4679**************************************.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.1621111IPR003441NAC domain
SuperFamilySSF1019414.45E-358110IPR003441NAC domain
PfamPF023654.2E-131888IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MNIYCGLLLG VSNVGAKEWY FFCMRGRKYK NSVRPNRVTG SGFWKATGID KPVYSNLDCV  60
GLKKSLVYYL GSAGKGSKTD WMMHEFRLPS SSESPTQQAA EVWTLCRIFK RVTHHRNPTI  120
VQPNRRPVIT LTDSGSKTSS LDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-331511169165NO APICAL MERISTEM PROTEIN
1ut4_B9e-331511169165NO APICAL MERISTEM PROTEIN
1ut7_A9e-331511169165NO APICAL MERISTEM PROTEIN
1ut7_B9e-331511169165NO APICAL MERISTEM PROTEIN
3swm_A9e-331511172168NAC domain-containing protein 19
3swm_B9e-331511172168NAC domain-containing protein 19
3swm_C9e-331511172168NAC domain-containing protein 19
3swm_D9e-331511172168NAC domain-containing protein 19
3swp_A9e-331511172168NAC domain-containing protein 19
3swp_B9e-331511172168NAC domain-containing protein 19
3swp_C9e-331511172168NAC domain-containing protein 19
3swp_D9e-331511172168NAC domain-containing protein 19
4dul_A9e-331511169165NAC domain-containing protein 19
4dul_B9e-331511169165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526731e-111AK352673.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142151.11e-84PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A078H0L41e-84A0A078H0L4_BRANA; BnaA04g24740D protein
TrEMBLM4F9I01e-84M4F9I0_BRARP; Uncharacterized protein
STRINGBra037743.1-P3e-84(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-82NAC domain containing protein 42